3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
CCG*CG
Length
5 nucleotides
Bulged bases
8FL9|1|L3|C|181
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_014 not in the Motif Atlas
Geometric match to IL_3HHN_003
Geometric discrepancy: 0.2774
The information below is about IL_3HHN_003
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_05642.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

8FL9|1|L3|C|180
8FL9|1|L3|C|181
8FL9|1|L3|G|182
*
8FL9|1|L3|C|255
8FL9|1|L3|G|256

Current chains

Chain L3
28S rRNA

Nearby chains

Chain L6
60S ribosomal protein L13

Coloring options:


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