IL_8FL9_031

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

8FL9|1|L3|A|943, 8FL9|1|L3|A|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_031 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2468

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8FL9|1|L3|A|723
8FL9|1|L3|C|724
*
8FL9|1|L3|G|942
8FL9|1|L3|A|943
8FL9|1|L3|A|944
8FL9|1|L3|U|945

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SA

60S ribosomal protein L4

Chain SD

60S ribosomal protein L7