IL_8FL9_039

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8FL9|1|L3|C|1214, 8FL9|1|L3|C|1215

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_039 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.2934

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

8FL9|1|L3|C|1082
8FL9|1|L3|U|1083
8FL9|1|L3|C|1084
*
8FL9|1|L3|G|1213
8FL9|1|L3|C|1214
8FL9|1|L3|C|1215
8FL9|1|L3|C|1216
8FL9|1|L3|G|1217

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L29

Chain SD

60S ribosomal protein L7