3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
CGAG*CGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_047 not in the Motif Atlas
Geometric match to IL_7RQB_089
Geometric discrepancy: 0.1437
The information below is about IL_7RQB_089
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.10
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
33

Unit IDs

8FL9|1|L3|C|1431
8FL9|1|L3|G|1432
8FL9|1|L3|A|1433
8FL9|1|L3|G|1434
*
8FL9|1|L3|C|1450
8FL9|1|L3|G|1451
8FL9|1|L3|A|1452
8FL9|1|L3|G|1453

Current chains

Chain L3
28S rRNA

Nearby chains

Chain LB
60S ribosomal protein L18
Chain LM
60S ribosomal protein L29

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2022 s