3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
CC(OMG)A(A2M)AG*CUAGUAGCUG
Length
17 nucleotides
Bulged bases
8FL9|1|L3|A|1650, 8FL9|1|L3|G|1654, 8FL9|1|L3|C|1655
QA status
Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8FL9|1|L3|C|1520
8FL9|1|L3|C|1521
8FL9|1|L3|OMG|1522
8FL9|1|L3|A|1523
8FL9|1|L3|A2M|1524
8FL9|1|L3|A|1525
8FL9|1|L3|G|1526
*
8FL9|1|L3|C|1648
8FL9|1|L3|U|1649
8FL9|1|L3|A|1650
8FL9|1|L3|G|1651
8FL9|1|L3|U|1652
8FL9|1|L3|A|1653
8FL9|1|L3|G|1654
8FL9|1|L3|C|1655
8FL9|1|L3|U|1656
8FL9|1|L3|G|1657

Current chains

Chain L3
28S rRNA

Nearby chains

Chain L6
60S ribosomal protein L13
Chain L9
60S ribosomal protein L15
Chain LK
60S ribosomal protein L27a
Chain LW
60S ribosomal protein L37
Chain SA
60S ribosomal protein L4
Chain SR
GTP-binding protein 4

Coloring options:

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