IL_8FL9_053

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GC*GGU

Length

5 nucleotides

Bulged bases

8FL9|1|L3|G|1577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_053 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.1799

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8FL9|1|L3|G|1550
8FL9|1|L3|C|1551
*
8FL9|1|L3|G|1576
8FL9|1|L3|G|1577
8FL9|1|L3|U|1578

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L19

Chain LX

60S ribosomal protein L37a

Chain SF

60S ribosomal protein L8