3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
GGUC*GUC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_055 not in the Motif Atlas
Homologous match to IL_8C3A_034
Geometric discrepancy: 0.1012
The information below is about IL_8C3A_034
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_63959.1
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
18

Unit IDs

8FL9|1|L3|G|1586
8FL9|1|L3|G|1587
8FL9|1|L3|U|1588
8FL9|1|L3|C|1589
*
8FL9|1|L3|G|1605
8FL9|1|L3|U|1606
8FL9|1|L3|C|1607

Current chains

Chain L3
28S rRNA

Nearby chains

Chain LW
60S ribosomal protein L37
Chain NP
Zinc finger protein 593

Coloring options:


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