IL_8FL9_061

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

8FL9|1|L3|G|1724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_061 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.102

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8FL9|1|L3|A|1723
8FL9|1|L3|G|1724
8FL9|1|L3|U|1725
*
8FL9|1|L3|A|1838
8FL9|1|L3|U|1839

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L21

Chain LM

60S ribosomal protein L29

Chain SD

60S ribosomal protein L7