3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
GACCCCAAAA*UGAAAAUGGAUGGCGC
Length
26 nucleotides
Bulged bases
8FL9|1|L3|C|1935, 8FL9|1|L3|A|2040, 8FL9|1|L3|A|2041, 8FL9|1|L3|U|2044
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8FL9|1|L3|G|1933
8FL9|1|L3|A|1934
8FL9|1|L3|C|1935
8FL9|1|L3|C|1936
8FL9|1|L3|C|1937
8FL9|1|L3|C|1938
8FL9|1|L3|A|1941
8FL9|1|L3|A|1942
8FL9|1|L3|A|1943
8FL9|1|L3|A|1944
*
8FL9|1|L3|U|2038
8FL9|1|L3|G|2039
8FL9|1|L3|A|2040
8FL9|1|L3|A|2041
8FL9|1|L3|A|2042
8FL9|1|L3|A|2043
8FL9|1|L3|U|2044
8FL9|1|L3|G|2045
8FL9|1|L3|G|2046
8FL9|1|L3|A|2047
8FL9|1|L3|U|2048
8FL9|1|L3|G|2049
8FL9|1|L3|G|2050
8FL9|1|L3|C|2051
8FL9|1|L3|G|2052
8FL9|1|L3|C|2053

Current chains

Chain L3
28S rRNA

Nearby chains

Chain L4
5S ribosomal RNA; 5S rRNA
Chain L7
60S ribosomal protein L13a
Chain LC
60S ribosomal protein L18a
Chain LN
60S ribosomal protein L3
Chain LT
60S ribosomal protein L35a
Chain NF
Ribosome biogenesis protein NSA2 homolog
Chain SR
GTP-binding protein 4

Coloring options:

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