IL_8FL9_075

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8FL9|1|L3|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_075 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.1307

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8FL9|1|L3|G|2001
8FL9|1|L3|A|2002
8FL9|1|L3|G|2003
8FL9|1|L3|U|2004
8FL9|1|L3|G|2005
*
8FL9|1|L3|C|2014
8FL9|1|L3|U|2015
8FL9|1|L3|C|2016

Current chains

Chain L3

28S rRNA

Nearby chains

Chain BA

60S ribosomal protein L12

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain SQ

mRNA turnover protein 4 homolog