IL_8FL9_080

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

8FL9|1|L3|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_080 not in the Motif Atlas

Geometric match to IL_7RQB_033

Geometric discrepancy: 0.2329

The information below is about IL_7RQB_033

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

8FL9|1|L3|U|2312
8FL9|1|L3|A|2313
8FL9|1|L3|G|2314
*
8FL9|1|L3|C|2325
8FL9|1|L3|G|2326

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LL

60S ribosomal protein L28

Chain LQ

60S ribosomal protein L32