3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
GAGUGG*CGC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_084 not in the Motif Atlas
Geometric match to IL_6DME_003
Geometric discrepancy: 0.3353
The information below is about IL_6DME_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_75527.1
Basepair signature
cWW-cWW-cSH-cWW
Number of instances in this motif group
10

Unit IDs

8FL9|1|L3|G|2542
8FL9|1|L3|A|2543
8FL9|1|L3|G|2544
8FL9|1|L3|U|2545
8FL9|1|L3|G|2546
8FL9|1|L3|G|2547
*
8FL9|1|L3|C|2772
8FL9|1|L3|G|2773
8FL9|1|L3|C|2774

Current chains

Chain L3
28S rRNA

Nearby chains

Chain L1
5.8S ribosomal RNA; 5.8S rRNA
Chain LY
60S ribosomal protein L38

Coloring options:


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