3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
G(OMG)G*CCU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_114 not in the Motif Atlas
Geometric match to IL_3GM7_005
Geometric discrepancy: 0.1656
The information below is about IL_3GM7_005
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

8FL9|1|L3|G|3898
8FL9|1|L3|OMG|3899
8FL9|1|L3|G|3900
*
8FL9|1|L3|C|4561
8FL9|1|L3|C|4562
8FL9|1|L3|U|4563

Current chains

Chain L3
28S rRNA

Nearby chains

Chain L7
60S ribosomal protein L13a
Chain LA
60S ribosomal protein L17
Chain LN
60S ribosomal protein L3

Coloring options:


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