IL_8FL9_114

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

G(OMG)G*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_114 not in the Motif Atlas

Geometric match to IL_3GM7_005

Geometric discrepancy: 0.1656

The information below is about IL_3GM7_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8FL9|1|L3|G|3898
8FL9|1|L3|OMG|3899
8FL9|1|L3|G|3900
*
8FL9|1|L3|C|4561
8FL9|1|L3|C|4562
8FL9|1|L3|U|4563

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain LA

60S ribosomal protein L17

Chain LN

60S ribosomal protein L3