3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
UAG*UGGG
Length
7 nucleotides
Bulged bases
8FL9|1|L3|G|4183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_120 not in the Motif Atlas
Homologous match to IL_8C3A_100
Geometric discrepancy: 0.1099
The information below is about IL_8C3A_100
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38958.10
Basepair signature
cWW-cWW-cWW-tHS
Number of instances in this motif group
9

Unit IDs

8FL9|1|L3|U|3927
8FL9|1|L3|A|3928
8FL9|1|L3|G|3929
*
8FL9|1|L3|U|4181
8FL9|1|L3|G|4182
8FL9|1|L3|G|4183
8FL9|1|L3|G|4184

Current chains

Chain L3
28S rRNA

Nearby chains

Chain L9
60S ribosomal protein L15
Chain LV
60S ribosomal protein L36a
Chain SF
60S ribosomal protein L8

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1379 s