IL_8FL9_122

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGGGCUUCUGGCGCCAAG*CGAC

Length

22 nucleotides

Bulged bases

8FL9|1|L3|C|4116, 8FL9|1|L3|U|4117, 8FL9|1|L3|U|4118, 8FL9|1|L3|G|4121

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FL9|1|L3|G|4091
8FL9|1|L3|G|4092
8FL9|1|L3|G|4093
8FL9|1|L3|G|4094
8FL9|1|L3|C|4116
8FL9|1|L3|U|4117
8FL9|1|L3|U|4118
8FL9|1|L3|C|4119
8FL9|1|L3|U|4120
8FL9|1|L3|G|4121
8FL9|1|L3|G|4122
8FL9|1|L3|C|4123
8FL9|1|L3|G|4124
8FL9|1|L3|C|4125
8FL9|1|L3|C|4126
8FL9|1|L3|A|4127
8FL9|1|L3|A|4128
8FL9|1|L3|G|4129
*
8FL9|1|L3|C|4155
8FL9|1|L3|G|4156
8FL9|1|L3|A|4157
8FL9|1|L3|C|4158

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L27

Chain LO

60S ribosomal protein L30

Chain LR

60S ribosomal protein L34

Chain LX

60S ribosomal protein L37a

Chain SE

60S ribosomal protein L7a

Chain SF

60S ribosomal protein L8