IL_8FL9_125

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GA(PSU)C*GAC

Length

7 nucleotides

Bulged bases

8FL9|1|L3|A|4292

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_125 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.1999

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8FL9|1|L3|G|4291
8FL9|1|L3|A|4292
8FL9|1|L3|PSU|4293
8FL9|1|L3|C|4294
*
8FL9|1|L3|G|4316
8FL9|1|L3|A|4317
8FL9|1|L3|C|4318

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L21

Chain LM

60S ribosomal protein L29

Chain LV

60S ribosomal protein L36a