3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
GA(PSU)C*GAC
Length
7 nucleotides
Bulged bases
8FL9|1|L3|A|4292
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_125 not in the Motif Atlas
Geometric match to IL_2O3X_003
Geometric discrepancy: 0.1999
The information below is about IL_2O3X_003
Detailed Annotation
Decoding loop related
Broad Annotation
Decoding loop related
Motif group
IL_61702.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
6

Unit IDs

8FL9|1|L3|G|4291
8FL9|1|L3|A|4292
8FL9|1|L3|PSU|4293
8FL9|1|L3|C|4294
*
8FL9|1|L3|G|4316
8FL9|1|L3|A|4317
8FL9|1|L3|C|4318

Current chains

Chain L3
28S rRNA

Nearby chains

Chain LE
60S ribosomal protein L21
Chain LM
60S ribosomal protein L29
Chain LV
60S ribosomal protein L36a

Coloring options:


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