IL_8FL9_150

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

8FL9|1|L3|C|4757, 8FL9|1|L3|U|4758, 8FL9|1|L3|A|4764, 8FL9|1|L3|G|4870, 8FL9|1|L3|G|4873, 8FL9|1|L3|U|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FL9|1|L3|C|4756
8FL9|1|L3|C|4757
8FL9|1|L3|U|4758
8FL9|1|L3|C|4759
8FL9|1|L3|G|4760
8FL9|1|L3|G|4761
8FL9|1|L3|A|4762
8FL9|1|L3|U|4763
8FL9|1|L3|A|4764
8FL9|1|L3|G|4765
*
8FL9|1|L3|U|4869
8FL9|1|L3|G|4870
8FL9|1|L3|C|4871
8FL9|1|L3|G|4872
8FL9|1|L3|G|4873
8FL9|1|L3|A|4874
8FL9|1|L3|G|4875
8FL9|1|L3|U|4876
8FL9|1|L3|G|4877

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a

Chain SC

60S ribosomal protein L6

Chain SG

60S ribosomal protein L9