IL_8FL9_156

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_156 not in the Motif Atlas

Geometric match to IL_4WF9_106

Geometric discrepancy: 0.2963

The information below is about IL_4WF9_106

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_78536.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8FL9|1|L3|G|4997
8FL9|1|L3|G|4998
*
8FL9|1|L3|C|5052
8FL9|1|L3|U|5053
8FL9|1|L3|C|5054

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L3

Chain LP

60S ribosomal protein L31