3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
GAACGCG*CUAAGC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_163 not in the Motif Atlas
Homologous match to IL_5TBW_373
Geometric discrepancy: 0.1248
The information below is about IL_5TBW_373
Detailed Annotation
Minor groove platform related
Broad Annotation
No text annotation
Motif group
IL_10207.3
Basepair signature
cWW-cWW-L-cSW-L-R-L-cWW-R-cWW
Number of instances in this motif group
2

Unit IDs

8FL9|1|L4|G|21
8FL9|1|L4|A|22
8FL9|1|L4|A|23
8FL9|1|L4|C|24
8FL9|1|L4|G|25
8FL9|1|L4|C|26
8FL9|1|L4|G|27
*
8FL9|1|L4|C|52
8FL9|1|L4|U|53
8FL9|1|L4|A|54
8FL9|1|L4|A|55
8FL9|1|L4|G|56
8FL9|1|L4|C|57

Current chains

Chain L4
5S rRNA

Nearby chains

Chain L5
60S ribosomal protein L11
Chain SB
60S ribosomal protein L5

Coloring options:


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