IL_8FL9_164
3D structure
- PDB id
- 8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State J3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CC*GAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FL9_164 not in the Motif Atlas
- Homologous match to IL_7RQB_113
- Geometric discrepancy: 0.1167
- The information below is about IL_7RQB_113
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_09061.8
- Basepair signature
- cWW-cWS-cSH-cWW
- Number of instances in this motif group
- 14
Unit IDs
8FL9|1|L4|C|28
8FL9|1|L4|C|29
*
8FL9|1|L4|G|48
8FL9|1|L4|A|49
8FL9|1|L4|A|50
8FL9|1|L4|G|51
Current chains
- Chain L4
- 5S rRNA
Nearby chains
- Chain L5
- 60S ribosomal protein L11
- Chain SB
- 60S ribosomal protein L5
Coloring options: