IL_8FL9_179
3D structure
- PDB id
- 8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State J3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- GGAAGUCGG*CUGU(OMC)
- Length
- 14 nucleotides
- Bulged bases
- 8FL9|1|L3|G|3839
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FL9_179 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.1629
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
8FL9|1|L3|G|2847
8FL9|1|L3|G|2848
8FL9|1|L3|A|2849
8FL9|1|L3|A|2850
8FL9|1|L3|G|2851
8FL9|1|L3|U|2852
8FL9|1|L3|C|2853
8FL9|1|L3|G|2854
8FL9|1|L3|G|2855
*
8FL9|1|L3|C|3837
8FL9|1|L3|U|3838
8FL9|1|L3|G|3839
8FL9|1|L3|U|3840
8FL9|1|L3|OMC|3841
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L23
- Chain LN
- 60S ribosomal protein L3
- Chain NP
- Zinc finger protein 593
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