IL_8FL9_181

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AA(PSU)GAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_181 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.2632

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8FL9|1|L3|PSU|3715
8FL9|1|L3|C|3716
8FL9|1|L3|A|3717
8FL9|1|L3|A2M|3718
8FL9|1|L3|A|3719
8FL9|1|L3|G|3720
8FL9|1|L3|U|3721
*
8FL9|1|L3|A|3732
8FL9|1|L3|A|3733
8FL9|1|L3|PSU|3734
8FL9|1|L3|G|3735
8FL9|1|L3|A|3736
8FL9|1|L3|A|3737
8FL9|1|L3|G|3738

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LU

60S ribosomal protein L36

Chain SF

60S ribosomal protein L8