IL_8FLB_098

3D structure

PDB id

8FLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8FLB|1|L3|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLB_098 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0788

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8FLB|1|L3|C|2867
8FLB|1|L3|G|2868
8FLB|1|L3|U|2869
8FLB|1|L3|A|2870
8FLB|1|L3|A|2871
8FLB|1|L3|C|2872
*
8FLB|1|L3|G|2877
8FLB|1|L3|G|2878
8FLB|1|L3|A|2879
8FLB|1|L3|U|2880
8FLB|1|L3|A|2881
8FLB|1|L3|A|2882
8FLB|1|L3|G|2883

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LX

60S ribosomal protein L37a

Chain NP

Zinc finger protein 593