IL_8FLB_173
3D structure
- PDB id
- 8FLB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State K2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8FLB|1|L3|A|1650, 8FLB|1|L3|G|1654
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FLB_173 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.0805
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8FLB|1|L3|OMG|1522
8FLB|1|L3|A|1523
8FLB|1|L3|A2M|1524
8FLB|1|L3|A|1525
8FLB|1|L3|G|1526
*
8FLB|1|L3|C|1648
8FLB|1|L3|U|1649
8FLB|1|L3|A|1650
8FLB|1|L3|G|1651
8FLB|1|L3|U|1652
8FLB|1|L3|A|1653
8FLB|1|L3|G|1654
8FLB|1|L3|C|1655
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L6
- 60S ribosomal protein L13
- Chain L9
- 60S ribosomal protein L15
- Chain LK
- 60S ribosomal protein L27a
- Chain LW
- 60S ribosomal protein L37
- Chain SA
- 60S ribosomal protein L4
- Chain SR
- GTP-binding protein 4
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