IL_8FLC_166
3D structure
- PDB id
- 8FLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State K3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FLC_166 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2867
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8FLC|1|L4|G|71
8FLC|1|L4|U|72
8FLC|1|L4|U|73
8FLC|1|L4|A|74
8FLC|1|L4|G|75
8FLC|1|L4|U|76
8FLC|1|L4|A|77
8FLC|1|L4|C|78
*
8FLC|1|L4|G|98
8FLC|1|L4|G|99
8FLC|1|L4|A|100
8FLC|1|L4|A|101
8FLC|1|L4|U|102
8FLC|1|L4|A|103
8FLC|1|L4|C|104
Current chains
- Chain L4
- 5S rRNA
Nearby chains
- Chain L3
- Large subunit ribosomal RNA; LSU rRNA
- Chain LC
- 60S ribosomal protein L18a
- Chain NR
- Translation machinery-associated protein 16
- Chain SB
- 60S ribosomal protein L5
- Chain SD
- 60S ribosomal protein L7
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