IL_8FLD_133
3D structure
- PDB id
- 8FLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State L1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- U(PSU)GA(PSU)U*AA(PSU)ACA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FLD_133 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3027
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
8FLD|1|L3|U|4295
8FLD|1|L3|PSU|4296
8FLD|1|L3|G|4297
8FLD|1|L3|A|4298
8FLD|1|L3|PSU|4299
8FLD|1|L3|U|4300
*
8FLD|1|L3|A|4310
8FLD|1|L3|A|4311
8FLD|1|L3|PSU|4312
8FLD|1|L3|A|4313
8FLD|1|L3|C|4314
8FLD|1|L3|A|4315
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L18
- Chain LE
- 60S ribosomal protein L21
- Chain LM
- 60S ribosomal protein L29
- Chain LV
- 60S ribosomal protein L36a
- Chain SB
- 60S ribosomal protein L5
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