IL_8FLD_151

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

8FLD|1|L3|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLD_151 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2033

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8FLD|1|L3|G|4680
8FLD|1|L3|A|4681
8FLD|1|L3|U|4682
8FLD|1|L3|U|4683
8FLD|1|L3|A|4684
8FLD|1|L3|U|4685
*
8FLD|1|L3|A|4705
8FLD|1|L3|G|4706
8FLD|1|L3|A|4707
8FLD|1|L3|A|4708
8FLD|1|L3|U|4709
8FLD|1|L3|C|4710

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain NK

Protein LLP homolog

Chain SG

60S ribosomal protein L9