IL_8FLD_177
3D structure
- PDB id
- 8FLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State L1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8FLD|1|L3|A|1650, 8FLD|1|L3|G|1654
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FLD_177 not in the Motif Atlas
- Homologous match to IL_8P9A_256
- Geometric discrepancy: 0.0756
- The information below is about IL_8P9A_256
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8FLD|1|L3|OMG|1522
8FLD|1|L3|A|1523
8FLD|1|L3|A2M|1524
8FLD|1|L3|A|1525
8FLD|1|L3|G|1526
*
8FLD|1|L3|C|1648
8FLD|1|L3|U|1649
8FLD|1|L3|A|1650
8FLD|1|L3|G|1651
8FLD|1|L3|U|1652
8FLD|1|L3|A|1653
8FLD|1|L3|G|1654
8FLD|1|L3|C|1655
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L6
- 60S ribosomal protein L13
- Chain L9
- 60S ribosomal protein L15
- Chain LK
- 60S ribosomal protein L27a
- Chain LW
- 60S ribosomal protein L37
- Chain SA
- 60S ribosomal protein L4
- Chain SR
- GTP-binding protein 4
Coloring options: