IL_8FLD_181

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

AUUA*(PSU)(PSU)CU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLD_181 not in the Motif Atlas

Homologous match to IL_8P9A_269

Geometric discrepancy: 0.3646

The information below is about IL_8P9A_269

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8FLD|1|L3|A|1746
8FLD|1|L3|U|1747
8FLD|1|L3|U|1748
8FLD|1|L3|A|1749
*
8FLD|1|L3|PSU|1781
8FLD|1|L3|PSU|1782
8FLD|1|L3|C|1783
8FLD|1|L3|U|1784

Current chains

Chain L3

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L10

Chain SB

60S ribosomal protein L5