IL_8FLF_145

3D structure

PDB id

8FLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

8FLF|1|L3|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLF_145 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.198

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8FLF|1|L3|G|4680
8FLF|1|L3|A|4681
8FLF|1|L3|U|4682
8FLF|1|L3|U|4683
8FLF|1|L3|A|4684
8FLF|1|L3|U|4685
*
8FLF|1|L3|A|4705
8FLF|1|L3|G|4706
8FLF|1|L3|A|4707
8FLF|1|L3|A|4708
8FLF|1|L3|U|4709
8FLF|1|L3|C|4710

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain NK

Protein LLP homolog

Chain SG

60S ribosomal protein L9