IL_8FLF_173

3D structure

PDB id

8FLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AA*UU(PSU)

Length

5 nucleotides

Bulged bases

8FLF|1|L3|U|1791

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLF_173 not in the Motif Atlas

Homologous match to IL_8GLP_292

Geometric discrepancy: 0.4835

The information below is about IL_8GLP_292

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

8FLF|1|L3|A|1737
8FLF|1|L3|A|1738
*
8FLF|1|L3|U|1790
8FLF|1|L3|U|1791
8FLF|1|L3|PSU|1792

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L4

5S ribosomal RNA; 5S rRNA

Chain LE

60S ribosomal protein L21

Chain SB

60S ribosomal protein L5