IL_8FOM_011

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

8FOM|1|QA|U|244, 8FOM|1|QA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_011 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0754

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8FOM|1|QA|C|242
8FOM|1|QA|A|243
8FOM|1|QA|U|244
8FOM|1|QA|C|245
8FOM|1|QA|A|246
8FOM|1|QA|G|247
*
8FOM|1|QA|C|277
8FOM|1|QA|G|278
8FOM|1|QA|A|279
8FOM|1|QA|C|280
8FOM|1|QA|G|281
8FOM|1|QA|A|282
8FOM|1|QA|C|283
8FOM|1|QA|G|284

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QQ

30S ribosomal protein S17