IL_8FOM_015

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_015 not in the Motif Atlas

Geometric match to IL_4LFB_015

Geometric discrepancy: 0.1208

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

8FOM|1|QA|G|371
8FOM|1|QA|C|372
8FOM|1|QA|A|373
8FOM|1|QA|A|374
8FOM|1|QA|U|375
*
8FOM|1|QA|A|389
8FOM|1|QA|C|390

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16