IL_8FOM_022

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8FOM|1|QA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_022 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1058

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8FOM|1|QA|C|569
8FOM|1|QA|G|570
8FOM|1|QA|U|571
8FOM|1|QA|A|572
8FOM|1|QA|A|573
8FOM|1|QA|A|574
8FOM|1|QA|G|575
*
8FOM|1|QA|C|880
8FOM|1|QA|G|881

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QQ

30S ribosomal protein S17