IL_8FOM_118

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

8FOM|1|RA|A|1510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_118 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.5719

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8FOM|1|RA|U|1482
8FOM|1|RA|G|1483
*
8FOM|1|RA|C|1506
8FOM|1|RA|A|1507
8FOM|1|RA|A|1508
8FOM|1|RA|C|1509
8FOM|1|RA|A|1510
8FOM|1|RA|A|1511
8FOM|1|RA|G|1512

Current chains

Chain RA

23S rRNA

Nearby chains