3D structure

PDB id
8FOM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site
Experimental method
X-RAY DIFFRACTION
Resolution
3.58 Å

Loop

Sequence
GGAAG*UGACAAC
Length
12 nucleotides
Bulged bases
8FOM|1|RA|C|1544
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FOM_120 not in the Motif Atlas
Homologous match to IL_7RQB_063
Geometric discrepancy: 0.2574
The information below is about IL_7RQB_063
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_02656.1
Basepair signature
cWW-L-R-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

8FOM|1|RA|G|1526
8FOM|1|RA|G|1527
8FOM|1|RA|A|1528
8FOM|1|RA|A|1529
8FOM|1|RA|G|1530
*
8FOM|1|RA|U|1541
8FOM|1|RA|G|1542
8FOM|1|RA|A|1543
8FOM|1|RA|C|1544
8FOM|1|RA|A|1545
8FOM|1|RA|A|1545|||A
8FOM|1|RA|C|1546

Current chains

Chain RA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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