IL_8FOM_232

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

UCAC*GUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_232 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.3267

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8FOM|1|XA|U|1532
8FOM|1|XA|C|1533
8FOM|1|XA|A|1534
8FOM|1|XA|C|1535
*
8FOM|1|XX|G|-8
8FOM|1|XX|U|-7
8FOM|1|XX|A|-6
8FOM|1|XX|G|-5

Current chains

Chain XA

16S rRNA

Chain XX

mRNA

Nearby chains

Chain XK

30S ribosomal protein S11