IL_8FOM_245

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

8FOM|1|YA|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_245 not in the Motif Atlas

Homologous match to IL_7RQB_012

Geometric discrepancy: 0.0941

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8FOM|1|YA|C|288
8FOM|1|YA|A|289
8FOM|1|YA|G|290
*
8FOM|1|YA|U|350
8FOM|1|YA|G|351
8FOM|1|YA|G|352
8FOM|1|YA|G|353

Current chains

Chain YA

23S rRNA

Nearby chains