IL_8FOM_247
3D structure
- PDB id
- 8FOM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 8FOM|1|YA|U|504, 8FOM|1|YA|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FOM_247 not in the Motif Atlas
- Geometric match to IL_7RQB_014
- Geometric discrepancy: 0.0536
- The information below is about IL_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.6
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8FOM|1|YA|G|481
8FOM|1|YA|A|482
8FOM|1|YA|A|483
8FOM|1|YA|C|484
*
8FOM|1|YA|G|496
8FOM|1|YA|A|497
8FOM|1|YA|G|498
8FOM|1|YA|U|499
8FOM|1|YA|G|500
8FOM|1|YA|A|501
8FOM|1|YA|A|502
8FOM|1|YA|A|503
8FOM|1|YA|U|504
8FOM|1|YA|A|505
8FOM|1|YA|G|506
8FOM|1|YA|A|507
8FOM|1|YA|G|508
8FOM|1|YA|C|509
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YW
- 50S ribosomal protein L22
- Chain YY
- 50S ribosomal protein L24
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