IL_8FOM_279

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8FOM|1|YA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_279 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1145

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

8FOM|1|YA|C|1208
8FOM|1|YA|G|1209
8FOM|1|YA|A|1210
8FOM|1|YA|U|1211
8FOM|1|YA|G|1212
8FOM|1|YA|A|1213
8FOM|1|YA|A|1214
8FOM|1|YA|G|1215
*
8FOM|1|YA|U|1234
8FOM|1|YA|G|1235
8FOM|1|YA|G|1236
8FOM|1|YA|A|1237
8FOM|1|YA|G|1238

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YU

50S ribosomal protein L20