IL_8FOM_295

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

8FOM|1|YA|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_295 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.3007

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8FOM|1|YA|G|1526
8FOM|1|YA|G|1527
8FOM|1|YA|A|1528
8FOM|1|YA|A|1529
8FOM|1|YA|G|1530
*
8FOM|1|YA|U|1541
8FOM|1|YA|G|1542
8FOM|1|YA|A|1543
8FOM|1|YA|C|1544
8FOM|1|YA|A|1545
8FOM|1|YA|A|1545|||A
8FOM|1|YA|C|1546

Current chains

Chain YA

23S rRNA

Nearby chains