IL_8FOM_299

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

8FOM|1|YA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_299 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.0839

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

8FOM|1|YA|A|1669
8FOM|1|YA|C|1670
8FOM|1|YA|U|1671
8FOM|1|YA|C|1672
8FOM|1|YA|U|1673
8FOM|1|YA|G|1674
*
8FOM|1|YA|C|1990
8FOM|1|YA|U|1991
8FOM|1|YA|G|1992
8FOM|1|YA|U|1993

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YO

50S ribosomal protein L14