IL_8FOM_306

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_306 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.134

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

8FOM|1|YA|U|1851
8FOM|1|YA|C|1852
8FOM|1|YA|A|1853
8FOM|1|YA|A|1854
8FOM|1|YA|G|1855
*
8FOM|1|YA|C|1887
8FOM|1|YA|G|1888
8FOM|1|YA|A|1889
8FOM|1|YA|A|1890
8FOM|1|YA|G|1891

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YD

50S ribosomal protein L2