IL_8FOM_307

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_307 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.0934

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

8FOM|1|YA|G|1856
8FOM|1|YA|G|1857
8FOM|1|YA|G|1858
8FOM|1|YA|A|1859
8FOM|1|YA|G|1860
*
8FOM|1|YA|C|1882
8FOM|1|YA|G|1883
8FOM|1|YA|A|1884
8FOM|1|YA|A|1885
8FOM|1|YA|C|1886

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28