IL_8FOM_316

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GCCUG*CUGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_316 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3493

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8FOM|1|YA|G|2106
8FOM|1|YA|C|2107
8FOM|1|YA|C|2108
8FOM|1|YA|U|2109
8FOM|1|YA|G|2110
*
8FOM|1|YA|C|2179
8FOM|1|YA|U|2180
8FOM|1|YA|G|2181
8FOM|1|YA|G|2182
8FOM|1|YA|C|2183

Current chains

Chain YA

23S rRNA

Nearby chains