IL_8FOM_327
3D structure
- PDB id
- 8FOM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- CCGAG*CGGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FOM_327 not in the Motif Atlas
- Geometric match to IL_4V88_474
- Geometric discrepancy: 0.3804
- The information below is about IL_4V88_474
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
8FOM|1|YA|C|2466
8FOM|1|YA|C|2467
8FOM|1|YA|G|2468
8FOM|1|YA|A|2469
8FOM|1|YA|G|2470
*
8FOM|1|YA|C|2480
8FOM|1|YA|G|2481
8FOM|1|YA|G|2482
8FOM|1|YA|C|2483
8FOM|1|YA|G|2484
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y9
- 50S ribosomal protein L36
- Chain YQ
- 50S ribosomal protein L16
- Chain YZ
- 50S ribosomal protein L25
Coloring options: