IL_8FOM_357
3D structure
- PDB id
- 8FOM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- CGAAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 8FOM|1|RA|A|1045, 8FOM|1|RA|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FOM_357 not in the Motif Atlas
- Homologous match to IL_9DFE_041
- Geometric discrepancy: 0.3111
- The information below is about IL_9DFE_041
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8FOM|1|RA|C|1043
8FOM|1|RA|G|1044
8FOM|1|RA|A|1045
8FOM|1|RA|A|1046
8FOM|1|RA|G|1047
8FOM|1|RA|A|1048
8FOM|1|RA|C|1049
8FOM|1|RA|A|1050
8FOM|1|RA|G|1051
*
8FOM|1|RA|U|1108
8FOM|1|RA|C|1109
8FOM|1|RA|G|1110
8FOM|1|RA|A|1111
8FOM|1|RA|G|1112
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R9
- 50S ribosomal protein L36
- Chain RH
- 50S ribosomal protein L6
Coloring options: