IL_8FOM_366

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_366 not in the Motif Atlas

Homologous match to IL_4LFB_067

Geometric discrepancy: 0.169

The information below is about IL_4LFB_067

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8FOM|1|XA|C|1259
8FOM|1|XA|C|1260
8FOM|1|XA|A|1261
8FOM|1|XA|C|1262
*
8FOM|1|XA|G|1273
8FOM|1|XA|G|1274
8FOM|1|XA|A|1275
8FOM|1|XA|G|1276

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XU

30S ribosomal protein Thx