IL_8FON_100

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8FON|1|RA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FON_100 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2557

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

8FON|1|RA|G|1087
8FON|1|RA|A|1088
8FON|1|RA|G|1089
8FON|1|RA|U|1090
8FON|1|RA|G|1091
*
8FON|1|RA|C|1100
8FON|1|RA|U|1101
8FON|1|RA|C|1102

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36