IL_8FON_109

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FON_109 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.1477

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8FON|1|RA|U|1357
8FON|1|RA|G|1358
8FON|1|RA|A|1359
8FON|1|RA|A|1360
8FON|1|RA|G|1361
*
8FON|1|RA|C|1370
8FON|1|RA|G|1371
8FON|1|RA|U|1372
8FON|1|RA|A|1373
8FON|1|RA|G|1374

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain R7

50S ribosomal protein L34

Chain RD

50S ribosomal protein L2